rs37146093 SNP Detail

Summary

• ID
  rs37146093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5878206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAGAG CTGCTTGCGT
  CATCTAAAGC TTCTTGTTAA AGGTCAGACT GGATGTCTTC AGAGTCTATT CGAGAGAAAA
  AAACCAGGAA TTAAACCAGG GGAAAGGCAA TTCTTAATGA GGATGTCAAG TTATATTAAA
  ACCAAAACAA ACAACAAAAA AATAAAATAC CCACAAAAAA ACAAAAAACA GGAAAGCCTC
  Y
  ACACTAGTAA TTTTCCTGAA AAGTCTTAAC ACATTATGAC TTACAGTGAG AGAGAAATAT
  CACACAGTCC AGTAACCCTA GAACAATGAC TTCTGAGAGT AACTGAGCCT CCAGTGAGGC
  GCACCAAACA CCCGGGTGTC ATGGGACACC ATAGCTGTGT ACTCTGTAGG ATGAAGAGAA
  GTGTCACAAA GGTGTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577278	NES13648682	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37146093					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577278	NES13648682	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5878206 () rs orientation: forward

Symbol	Name	Function Class
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr543181	regulatory region 543181	1297 bp distal
Rr543182	regulatory region 543182	177 bp distal
Rr543183	regulatory region 543183	40 bp distal
Rr543184	regulatory region 543184	408 bp proximal
Rr543185	regulatory region 543185	617 bp proximal
Rr543186	regulatory region 543186	1652 bp proximal
Tssr157767	transcription start site region 157767	1432 bp upstream
Tssr157768	transcription start site region 157768	1390 bp upstream
Tssr157769	transcription start site region 157769	1338 bp upstream
Tssr157770	transcription start site region 157770	1249 bp upstream
Tssr157771	transcription start site region 157771	1207 bp upstream
Tssr157772	transcription start site region 157772	within coordinates
Tssr157773	transcription start site region 157773	118 bp downstream
Tssr157774	transcription start site region 157774	1591 bp downstream