rs37147198 SNP Detail

Summary

• ID
  rs37147198
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149203641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGGTGA TCTTGACTGT
  GGAGATGCTA GGATTTCTTT GACTGGGCAC AGAGCAAGGC TTCCCCTTTG GCCTCCCAAA
  TCAGAGAGAC CAGGTTTGGC ACACCATAAG CATGTTTTTC TCTATGCAGC AACAGTGTGG
  AGTGCTCAGA CCCAACCCTT TTCATGCTAC ATCACACTTA ATCAGCTTGC AAGCCCGAGA
  S
  GGAACAAGTG GCTTCCTTAA GTCACCAGTT CCTCAAGCCA CCGCTGTCTC TCTCATGCAG
  GGCTCTCTTG GCTCTGTGAA CTGATGGTGG GATGCTAAGC AAGGCTGTCC TCCAGGAACG
  GTAGCAGTGG AAACCCCTAG TCTGGGCAGG GCAGGGATAG TGCTTGCTCA GCCCTGGTAG
  GAGCTCCCCT CTCTCCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51539997	NES14861436	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37147198					SNP	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539997	NES14861436	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149203641 () rs orientation: forward

Symbol	Name	Function Class
Alox5ap	arachidonate 5-lipoxygenase activating protein	within coordinates
Rr124816	regulatory region 124816	1240 bp distal
Rr124817	regulatory region 124817	within coordinates
Tssr49889	transcription start site region 49889	1773 bp downstream
Tssr49890	transcription start site region 49890	1743 bp downstream
Tssr54633	transcription start site region 54633	216 bp downstream