rs37147222 SNP Detail

Summary

• ID
  rs37147222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCATTGAC AAATCTAATT GATCAGCAGC AGCAGAAAAT
  CATTGCCCTG CAGAGCGGTT TACAAGCTGG TGAGTCCCCG GCCTGATTAG TGTCTCCTGA
  R
  AGCTCAGTGC CAATCTAGCC CCTGGGAGCT CGCTCTGGCT TCTGACTCTT CTGTTACCAT
  TCATTTTTCA CAGTCACTGG GCAGGGGTGG GGGGGGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51810818	NES14774570	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G	G	G	G	A	G
ss133506700	ENSMUSSNP2108179	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37147222					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810818	NES14774570	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639637 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1742 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	943 bp distal
Rr399817	regulatory region 399817	794 bp downstream
Rr636156	regulatory region 636156	1792 bp distal
Rr636157	regulatory region 636157	1931 bp distal
Rr636158	regulatory region 636158	1252 bp distal
Rr636159	regulatory region 636159	689 bp distal
Rr636160	regulatory region 636160	904 bp proximal
Tssr58075	transcription start site region 58075	1994 bp downstream
Tssr58076	transcription start site region 58076	1889 bp downstream
Tssr58077	transcription start site region 58077	1810 bp downstream
Tssr58078	transcription start site region 58078	899 bp downstream
Tssr58079	transcription start site region 58079	680 bp downstream
Tssr58080	transcription start site region 58080	333 bp downstream
Tssr58081	transcription start site region 58081	94 bp upstream
Tssr58082	transcription start site region 58082	443 bp upstream