rs37147350 SNP Detail

Summary

• ID
  rs37147350
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54494028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCGCTA CAGGGCAGCA
  AGCTCGAGGG CGAGCAGGGA GAGTAGGCTG TGATCCCGCC TGATGGATGG CGGAGGCGAG
  CGCGCGGAGG CGGCTCATGG CCCGCGGGCA GTGTTTCGGG GAATGTGGCC GGCACGCCGT
  GCGTGGCTAG CCCTGAGCCG GGACAGCCGC GCCGGGCGGG GACGGCGTCA AGGTCAAGGC
  K
  GCCAGTACTG CTCCGGGTGT CCCCACCAGT GTCCTCCAGG ATAGGTGCAC AGGCCTCCCC
  CGGAGCCCTT GAGGGTCACA GACAGGCCAC CTAGGCCCCG CGGCCCTGTC ACCTGCGGGT
  CTCCGGGCAG CATGCCCAGG TCGCCCCTCC CTGATCCCTC AGCCTTTGAC CGGGTAAACG
  CTGGGCGCAA GAGGGTTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52018426	NES15031923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37147350					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018426	NES15031923	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54494028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	within coordinates
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	within coordinates
Rr401372	regulatory region 401372	296 bp downstream
Rr679159	regulatory region 679159	223 bp distal
Rr679160	regulatory region 679160	within coordinates
Tssr85161	transcription start site region 85161	232 bp downstream
Tssr85162	transcription start site region 85162	284 bp upstream