rs3715306 SNP Detail

Summary

• ID
  rs3715306
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86701767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GCAAAACTTG TCAATGAAAT
  K
  ATTTGGTGCA TAACTGAACA TGTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5091559	WI_WGS_11_87475869	WI	MOUSE	f	SNP							G	T
ss37229644	NES08590348	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T	G	G		G	T	G	T	T	T	T
ss38842761	mCV23210336	ABI	CRAMUS_MOUSE	f	SNP	G	T	G					T	G
ss132508696	ENSMUSSNP2640273	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3715306					SNP	G	T	G	G	T	G	G	T	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229644	NES08590348	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86701767 () rs orientation: forward

Symbol	Name	Function Class
A130040M12Rik	RIKEN cDNA A130040M12 gene	887 bp downstream
Rr402834	regulatory region 402834	946 bp upstream
Rr453657	regulatory region 453657	within coordinates
Rr453658	regulatory region 453658	763 bp proximal