rs3715346 SNP Detail

Summary

• ID
  rs3715346
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77279585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG TATATTCTAT CCTAAGTTTT
  W
  AAATAGAACA TTTGAATTCT TTACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss5091600	WI_WGS_13_74212514	WI	MOUSE	f	SNP				A	T
ss39047432	mCV22684973	ABI	CRAMUS_MOUSE	f	SNP		A			T		A
ss49119329	NES12423673	PERLEGEN	MM_PANEL2	f	SNP	A	A	A			T	A		T	A	T
ss144701588	ENSMUSSNP1611058	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss324447426	CHEV_13_77270727	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs3715346					SNP	A	A	A	A	T	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119329	NES12423673	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77279585 () rs orientation: forward

Symbol	Name	Function Class
Rr284991	regulatory region 284991	within coordinates
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123275	transcription start site region 123275	137 bp upstream