rs37153568 SNP Detail

Summary

• ID
  rs37153568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTGTT GCACTGTGTT
  TACCCAGCTT TTATGTGGCT GCCAGGAATC TGAATTTCAC CCCTCATGCT TGCACAGTAA
  GAGCTCCGTC ACCTCTCATA TGAAATTGAT CTTTACTTTT AAAATGCAAT CAACTCCCCC
  TCTTCTTTGA CCTTGCAGCC CTTCTCCTTC CTCTATTTAT TGTGTCTTGT CTCCCCACTG
  R
  CCAGGAACAT AAGCTTCATA ACCTTCCTTA TTCCAGTGCT TGTAAAACAA TGGTACTTAG
  ACCATCCAGT TTACAAACTG CATCTCCACA ATAAAAGTAG ACACTGCTTT CTTGATTAAG
  TTTTGCTAAA AAACAAAAAC AATTTGAGAC AGGGTTAGGC TCCCATGTGT TGGGACAGGC
  ATCTCCAGCA TGCCCATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51771842	NES14721790	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37153568					SNP	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771842	NES14721790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	702 bp distal
Gm72185	predicted gene, 72185	1045 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	861 bp downstream
Rr614893	regulatory region 614893	1610 bp distal
Rr614894	regulatory region 614894	1072 bp distal
Rr614895	regulatory region 614895	959 bp distal
Rr614896	regulatory region 614896	136 bp distal
Tssr47395	transcription start site region 47395	1625 bp downstream
Tssr47396	transcription start site region 47396	1350 bp downstream
Tssr47397	transcription start site region 47397	952 bp downstream
Tssr51962	transcription start site region 51962	1087 bp upstream