rs37156491 SNP Detail

Summary

• ID
  rs37156491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127582608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGGGT CTTGACTTGG
  AAGCTAGCCT GAGCTACATG ACAAAACCTT GTCTAAAAAG AAAACCGTTA ACAAGAAAGA
  GATCTGAGAG CAGAAACTCC GATTTTTATG TTACTTTATT GCCTGGGTTT ATTTGGCACA
  ATCACTTGGC AATGTCTTAT CTTGTACCTG CTTTGATACA GCTCAATCGA AAGAAGATTC
  Y
  GTGGCTGTCT CTTCTTCCAA GAAGGAATAA TAAACGTTGA TCATTAACCA ACGAAATTAC
  ATCCCTTACT GGAATCTGCC TCACTTAAAT GTACTTAAGT CCTTTCCCAG CCGAGGCTTC
  CCAGCAGAAT TGGGGGGGGG GGGGAGGCCC TCCAGTAGAC TGACAACAGT GCAGAAGCCA
  CATCATTTTA TTGTCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618335	NES14659894	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37156491					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618335	NES14659894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127582608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	538 bp proximal
Cpgi13801	CpG island 13801	1679 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1166 bp downstream
Gm65225	predicted gene, 65225	1434 bp downstream
Rr584859	regulatory region 584859	645 bp distal
Rr584860	regulatory region 584860	356 bp proximal
Rr584861	regulatory region 584861	839 bp proximal
Rr584862	regulatory region 584862	964 bp proximal
Rr584863	regulatory region 584863	1288 bp proximal
Rr584864	regulatory region 584864	1856 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	228 bp upstream
Tssr31595	transcription start site region 31595	245 bp upstream
Tssr31596	transcription start site region 31596	264 bp upstream
Tssr31597	transcription start site region 31597	312 bp upstream
Tssr31598	transcription start site region 31598	338 bp upstream
Tssr31599	transcription start site region 31599	843 bp upstream
Tssr31600	transcription start site region 31600	907 bp upstream
Tssr31601	transcription start site region 31601	941 bp upstream
Tssr31602	transcription start site region 31602	982 bp upstream
Tssr31603	transcription start site region 31603	1027 bp upstream
Tssr31604	transcription start site region 31604	1144 bp upstream
Tssr31605	transcription start site region 31605	1643 bp upstream
Tssr31606	transcription start site region 31606	1841 bp upstream
Tssr35598	transcription start site region 35598	783 bp downstream
Tssr35599	transcription start site region 35599	867 bp downstream
Tssr35600	transcription start site region 35600	884 bp downstream
Tssr35601	transcription start site region 35601	910 bp downstream
Tssr35602	transcription start site region 35602	1242 bp downstream