rs37157489 SNP Detail

Summary

• ID
  rs37157489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCGGCAA TGACCAGATA
  TATCCCCACC AGTATCACAA CTTGCAACGC GCTCCGTTCC CATCTGCCCT CTGCCTCCCT
  ACTGTGTTGA TTCCCATTTC CAAAACTAGC TCAGAATGCA TCCCACTGGC AGCCAGGCAA
  TGCCTTCTTG CAGATCTGGA GGCTTCAGGA GCCTTTGCTG CCTCTTAGGC TCCTGCAGAG
  M
  GATGGCCTTG CTCTCTCTGG GCCCTTTTCC CCCAAGATGC TGTGCAGTCG TCTCACTAAA
  TCAAAACTGC CAGAACTGAG TTTTAAGCGA TATATAGCCA CCACATCTAT TTTGTTCCTT
  TATACTTTCA AAGTAGGACA GATTCGCAAA ATACATTGAG TCAGACTCAG TGTCCACGAT
  GGAGAGACGA GTGGGTAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541964	NES14683676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37157489					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541964	NES14683676	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	159 bp proximal
Gm66274	predicted gene, 66274	110 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	283 bp proximal
Rr578060	regulatory region 578060	1586 bp proximal
Tssr29479	transcription start site region 29479	350 bp upstream
Tssr29480	transcription start site region 29480	388 bp upstream
Tssr29481	transcription start site region 29481	393 bp upstream
Tssr29482	transcription start site region 29482	451 bp upstream
Tssr29483	transcription start site region 29483	517 bp upstream
Tssr29484	transcription start site region 29484	648 bp upstream
Tssr29485	transcription start site region 29485	945 bp upstream
Tssr29486	transcription start site region 29486	966 bp upstream
Tssr29487	transcription start site region 29487	1076 bp upstream
Tssr29488	transcription start site region 29488	1094 bp upstream
Tssr33509	transcription start site region 33509	1225 bp downstream