rs37159389 SNP Detail

Summary

• ID
  rs37159389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111885358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCAAAC TCCATCGCCT
  TCCTGGTCCC CCAGAGCCAG TCCTGTGAAA GGCACGGTGT GCAGTTCCTG CACGAGCTGT
  AGATGTCTGC ATATCGAGCT TAGGTACAGG TCATGATTTG TCAATCACAT GCTTAGGTAC
  GGTTCCCCGC TGGCCCCGTT TCTGGCTGTT CAGTGGCGTG AGGGCCTGCG GGTTAGCGGC
  R
  TGGTCGCCCA CAAGTTCTCT TTTCTCTCTC CGCGTTGCAT ATCCTGTCTC CATTAGAGCT
  GATCTGAACA ATTAACTACC ACGTGGTACG GAAGACCGGA TGTTTCAGCA GCTCTCTGGA
  CGGAGGCCGG TCCTGAGGCT GAAGTTCTAA GCAGCGCAGC GCCACGTCGC GCAGACCCGG
  GGACAGGTGT GACGGGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss51156739	NES14327356	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs37159389					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51156739	NES14327356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111885358 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Rr486186	regulatory region 486186	1649 bp distal
Tssr124031	transcription start site region 124031	597 bp upstream
Tssr124032	transcription start site region 124032	386 bp upstream