rs37159489 SNP Detail

Summary

• ID
  rs37159489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143282049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGTTTA CACGTCTCTG
  AGTGTCACAA TGAAATATTG AGGTCAGTGG CTTTTCTTTG CATTTGAATC CTCAGTGTCT
  GGCATACAAT AGCTGCACAA TGAATGTTTA TAATTCTTCC TTCACCTTTA GCCTTCAACG
  ATTAGGAAAT TATTATTCTA TAGTTAGATA TTCTTTTCTT CCACAAGGAG TAGTTGAATT
  M
  TGTCACCTCT CCCATGTAAG TAGGTTAAAC ACTGTAATAT AATTTCTGTT CATGGATGAG
  TGAACATTAC AACTTGTCAC TGTTAAAGTG ATCAAACTGC TTAGCACCTA TTTAATTAAG
  GCAGAAGACA CTTGGCTGAT ATCTTCATTT TTATCAGTTA AATCCTAATA AGGAAAGTGA
  TATTTTGTCT AGATCAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51458614	NES13997500	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	A		C	C	C	C		A
ss322052286	CHEV_6_143284843	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37159489					SNP	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458614	NES13997500	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143282049 () rs orientation: forward

Symbol	Name	Function Class
Rr380238	regulatory region 380238	139 bp upstream