rs3716189 SNP Detail

Summary

• ID
  rs3716189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132899283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG AGTTACAGAT GGTTGTGAGC
  Y
  TCTATGTGGG TGCTGGGAAT TCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5092445	WI_WGS_4_130741565	WI	MOUSE	f	SNP			T	C
ss45613455	mCV24818625	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	T
ss147484320	ENSMUSSNP5336293	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss321339076	CHEV_4_132727887	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3716189					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132899283 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	258 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr601216	regulatory region 601216	1091 bp distal
Tssr1326	transcription start site region 1326	717 bp upstream
Wasf2	WASP family, member 2	within coordinates