rs37161941 SNP Detail

Summary

• ID
  rs37161941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8500332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATAAGA TTTGAACTTA
  AAAAAATGAA CCTGGAGATG CAACTCAGTC AGTTGATGGA GAACTTAGCA TGCACTGAGC
  TCTGGGCTTG TCAGCACTGC ATAAACTGGA CATGGGGTGC AGGCCAAGGC ACAATGGTAG
  TGAGCCTGGA GATGCGTACC TTCTCTCAAC TTCCTCCCTG CTACAGAAAG CATCAGAGGA
  R
  ACATAAATAT CCTGACTTCA GAGCCACGCT GAGGTTAGGT CCCTTGCCTT TGGTCAGAAA
  CCTACCTGGT CTCTAATACA TACTTACTGA GCGACCTCAT GCAAGGTATT CAACCTTTCT
  GAGCCTCCCT ACCTGTACTA TTCGGCTCCC GCTTCATTGA GGAATGGGTG AACCATGTTT
  CCTGTTTGGC ACTGTGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51776439	NES14543192	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37161941					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776439	NES14543192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8500332 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	within coordinates
Litafd	LITAF domain containing	within coordinates
Rr322148	regulatory region 322148	1532 bp distal
Rr322149	regulatory region 322149	332 bp distal
Rr322150	regulatory region 322150	69 bp proximal
Tssr137001	transcription start site region 137001	1678 bp downstream
Tssr137002	transcription start site region 137002	1674 bp downstream
Tssr137003	transcription start site region 137003	1651 bp downstream
Tssr137004	transcription start site region 137004	403 bp upstream
Tssr139871	transcription start site region 139871	275 bp downstream