rs3716202 SNP Detail

Summary

• ID
  rs3716202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGGTTGAC AACACTTTCA GAACAGAAGC CGTCGCATCG
  CATCCTTGTA CCAGCCTCTG TGCACATTAG GTCCAGCCTG GTCCACTCAC TGTCATCTGC
  R
  GTTTGCACCG TCAGAAACAT CCTGACTTGT ATCCTTGCTT CCTTTTCTCC CTGTGAAACA
  CTCCATTTCC CCCAGGAACA GCCACAGTGT GCTTTCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5092458	WI_WGS_9_40982511	WI	MOUSE	f	SNP		A	G
ss136338041	ENSMUSSNP988598	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322919544	CHEV_9_40588195	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3716202					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691408 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	415 bp downstream
Rr676919	regulatory region 676919	1827 bp distal
Tssr84467	transcription start site region 84467	222 bp upstream
Tssr84468	transcription start site region 84468	964 bp upstream
Tssr84469	transcription start site region 84469	1016 bp upstream