rs37162490 SNP Detail

Summary

• ID
  rs37162490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85533795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGGGAA TATTGCGATG
  ATTAATAATC GCGCGGCAGG GTTGCTGATG TAAAGCGATT TGCGGATGTA AAGGGCAATA
  AACATGCGGA TGTAAAGGAA TCTATCGAGA TTCCAGAAGT CTCTAAGGAG CCGTGGGTGT
  GTGCAGCAGA GCCGTGGGGG CGGGGATGGG GAGGGCAGTG CCGCAGTGAC TACCGCTGGG
  Y
  ACTCCGTAGC AATTAACGAG ATGTGTGGGG CTAATTCTTT ATGAGGCTGA TCTCCCCCCT
  AACGCCAATA CACTCCACTA TCCTCTTCTG TTGGTCGCCC ACGTTCCCCA GTCCCTTTGG
  CTATAGAAGT GTGGGATTTT TTTTTCTAGA ATTTCAAAAC TGAAAGGGAC TTCAGAAATT
  AAACTTGTTA TTTCATAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
ss51036427	NES14389599	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
rs37162490					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51036427	NES14389599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85533795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	547 bp distal
Cpgi4900	CpG island 4900	within coordinates
Gm56541	predicted gene, 56541	928 bp upstream
Gm60138	predicted gene, 60138	within coordinates
Rr369567	regulatory region 369567	within coordinates
Rr403417	regulatory region 403417	751 bp upstream
Rr469911	regulatory region 469911	1010 bp distal
Rr469912	regulatory region 469912	589 bp distal
Rr469913	regulatory region 469913	within coordinates
Rr469914	regulatory region 469914	282 bp proximal
Rr469915	regulatory region 469915	588 bp proximal
Rr469916	regulatory region 469916	790 bp proximal
Rr469917	regulatory region 469917	902 bp proximal
Tssr3900	transcription start site region 3900	820 bp downstream
Tssr114406	transcription start site region 114406	772 bp downstream
Tssr114407	transcription start site region 114407	731 bp downstream
Tssr117091	transcription start site region 117091	1214 bp upstream
Tssr117092	transcription start site region 117092	1082 bp upstream
Tssr117093	transcription start site region 117093	1055 bp upstream
Tssr117094	transcription start site region 117094	1027 bp upstream