rs3716342 SNP Detail

Summary

• ID
  rs3716342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT GAAACACTCC ATTTCCCCCA
  R
  GAACAGCCAC AGTGTGCTTT CTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5092598	WI_WGS_9_40982586	WI	MOUSE	f	SNP		A	G
ss136338044	ENSMUSSNP3810522	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322919546	CHEV_9_40588270	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3716342					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691483 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	340 bp downstream
Rr676919	regulatory region 676919	1902 bp distal
Tssr84467	transcription start site region 84467	147 bp upstream
Tssr84468	transcription start site region 84468	889 bp upstream
Tssr84469	transcription start site region 84469	941 bp upstream