rs37163421 SNP Detail

Summary

• ID
  rs37163421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAGAAC ATCCCGTGTA
  AACAGAATGT TGGCATCTGA GGAAGTTCTG ATTTAGACTG GCCTGGCCAT CCTGTCTATG
  TTTGCTCGTT TCAGCATTTG GGTTGTAATG TGTCAATGTT GAGGGAAATT AGAAATTAGT
  AAAACTGCAG ACTTTTCATA CTAGAAGGTT TTTTTTTTTT TTCCTTGTCT GGACCAACTA
  Y
  TTTGAAAAGA TCGAAGGTGA CAAGTTGGCA GAGCAGTGTC TCTTTTTTGC AAGTCTCCCC
  CATCCTCCAA CCATGTCCCA GTCATTCCCC TCTCCTCCCC ACAGGTCAGG AATCTCTGGA
  CTCATAAGTG TGTGCAAGTC AGTAGAGAGT ATCAGATCTC CTGGAGCTGG GATTACAGGC
  TGTTGTGAGC CCTCTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50654641	NES14025694	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37163421					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654641	NES14025694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	908 bp distal
Cpgi21502	CpG island 21502	1672 bp proximal
Gm29824	predicted gene, 29824	72 bp upstream
Rr675417	regulatory region 675417	859 bp distal
Rr675418	regulatory region 675418	within coordinates
Rr675419	regulatory region 675419	130 bp proximal
Rr675420	regulatory region 675420	580 bp proximal
Rr675421	regulatory region 675421	1338 bp proximal
Tbx20	T-box 20	1368 bp upstream
Tssr88516	transcription start site region 88516	1361 bp upstream