rs37163778 SNP Detail

Summary

• ID
  rs37163778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85810971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCCAA ATCCTGGGAT
  AAAAGGTGTT CACTACCACT ACCTGGCTTA GAGTTGAATC TTAATGAACA GAGAGGGCAA
  GAGCTAGATC AGAAGGGGGT GGAGTCATCC TAGAGAACTC CTTAGCAGTG TCCTGATGTC
  CTCCAGAGTT TCAGAAGGTG AGAGGAGAGT TGAGGTCCAA GGACAGAGTG TCATTTCCCC
  Y
  GACTGTGGTG ACAAAAACTC TTTGTGATGT AACTTGGGAG TCTCTGCTGT GGCACAGATA
  CTAGGTCACA TGACAGACTG CAGCGCCCCT CACACACCCA AGATTCTTCT TCCCAACTTC
  TTGGTGCACA CATCCACTTT CTGTTGCCTG ATTCCTGATC TGTTTCCATA AGTGCTTTCG
  GGAGATGTTT TTTCCTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51034523	NES14384596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37163778					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034523	NES14384596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85810971 () rs orientation: forward

Symbol	Name	Function Class
D12Mit256	DNA Segment, Chr 12, Massachusetts Institute of Technology 256	1297 bp proximal
D12Mit256.3	DNA segment, Chr 12, Massachusetts Institute of Technology 256.3	1211 bp proximal
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261860	regulatory region 261860	1571 bp distal
Rr261861	regulatory region 261861	within coordinates
Rr268751	regulatory region 268751	831 bp proximal