rs37163942 SNP Detail

Summary

• ID
  rs37163942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90174713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAAGAAG GAAGGACCTA
  GTGGTCTCTA AGGAGCTGTG GTGGAATATG AGAGTTTGGT GATGTCACAG GTGGAAGAAT
  TCAAGATTGG CTGATCATTT ATCCTTTCCT TAGAAGAACT AGGAAGAAGA AGGGGGGGTG
  TCCACTATCG TTGCCATGGG AACATTATCC TCTCTTGCTC CATCTCTTCC TCGATTGACC
  R
  TTCCAGATGC AGTGAGTGAA GCAGAGGCCA TGGCAGAGGA GCGGCCTCCC CGGTTGGTGG
  ATTACTTTGT GGTGGCTGGG CTTGCAGGAA ATGGAGCGCC TATACCTGAG GAGAAGTGGG
  TTCCCGAGCC TACCGGGCCC CTGCGCCCTC CCCGGCCAGC TGAACCTATT ACAGATGTGG
  CAGTCATCGC TAGGGCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50992056	NES13923869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37163942					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50992056	NES13923869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90174713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	1211 bp distal
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	1010 bp upstream
Rr580322	regulatory region 580322	1021 bp distal
Rr580323	regulatory region 580323	1989 bp distal
Rr580324	regulatory region 580324	882 bp distal
Rr580325	regulatory region 580325	534 bp distal
Tssr30185	transcription start site region 30185	1468 bp downstream
Tssr30186	transcription start site region 30186	1439 bp downstream
Tssr30187	transcription start site region 30187	905 bp downstream
Tssr30188	transcription start site region 30188	840 bp downstream
Tssr34202	transcription start site region 34202	1831 bp upstream
Tssr34203	transcription start site region 34203	1009 bp upstream