rs37165062 SNP Detail

Summary

• ID
  rs37165062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATCCTT ACTGAACTTT
  TAAAAGGCCG AGTAGGATGG CTCACAGCCT TTGCATACAG CCATTGCGGT GCCTTGCAGT
  GGAGATCAGT AACATGTACC CTTTCCACTT TCAGTCTTGT TATTTTGACC GAGATGATGT
  GGCTCTGAAG AACTTTGCCA AATACTTTCT CCACCAATCT CATGAGGAGA GGGAGCATGC
  Y
  GAGAAACTGA TGAAGCTGCA GAACCAGCGA GGTGGCCGAA TCTTCCTGCA GGATATAAAG
  GTAAGTAGAT CCTAGGGGTG CCCTAAATGA GCGGTTAGAC TTTATTCAGG AAATGATGGT
  GCACTGAGGC TTCTGTCCTT GTGTTGTTGG CAAATGGCAG TTGTCGAGCA TCCTGCGGTG
  AAAGCTTAGA GGAAATTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605206	NES13645670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37165062					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605206	NES13645670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961631 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	907 bp downstream
Cpgi10595	CpG island 10595	882 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1747 bp upstream
Rr543964	regulatory region 543964	1760 bp distal
Rr543965	regulatory region 543965	1534 bp distal
Rr543966	regulatory region 543966	265 bp distal
Rr543967	regulatory region 543967	64 bp proximal
Tssr155003	transcription start site region 155003	1556 bp downstream
Tssr155004	transcription start site region 155004	1415 bp downstream
Tssr155005	transcription start site region 155005	1149 bp downstream
Tssr155006	transcription start site region 155006	48 bp downstream
Tssr155007	transcription start site region 155007	within coordinates
Tssr155008	transcription start site region 155008	290 bp upstream
Tssr155009	transcription start site region 155009	636 bp upstream
Tssr155010	transcription start site region 155010	826 bp upstream
Tssr158131	transcription start site region 158131	1832 bp upstream
Tssr158132	transcription start site region 158132	1818 bp upstream
Tssr158133	transcription start site region 158133	1761 bp upstream
Tssr158134	transcription start site region 158134	1736 bp upstream
Tssr158135	transcription start site region 158135	1700 bp upstream
Tssr158136	transcription start site region 158136	1327 bp upstream
Tssr158137	transcription start site region 158137	30 bp upstream
Tssr158138	transcription start site region 158138	within coordinates
Tssr158139	transcription start site region 158139	318 bp downstream
Tssr158140	transcription start site region 158140	539 bp downstream
Tssr158141	transcription start site region 158141	590 bp downstream
Tssr158142	transcription start site region 158142	606 bp downstream
Tssr158143	transcription start site region 158143	665 bp downstream
Tssr158144	transcription start site region 158144	822 bp downstream