rs3716579 SNP Detail

Summary

• ID
  rs3716579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6241228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GTCCGGGCTC CGCAGCGCCG
  Y
  GCACCCCGGG CAGCTAGACC GAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5092837	WI_WGS_18_6105385	WI	MOUSE	f	SNP	C						T
ss39625485	mCV22968967	ABI	CRAMUS_MOUSE	f	SNP	C	T	T				T	T
ss48396599	NES12265178	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C		T	T	T			T	T	C		T
ss146582120	ENSMUSSNP1844141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T				C
ss325520797	CHEV_18_6241226	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3716579					SNP	C	T	T	C	T	C	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396599	NES12265178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6241228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr346583	regulatory region 346583	1973 bp proximal
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	14 bp upstream
Tssr152354	transcription start site region 152354	10 bp downstream
Tssr152355	transcription start site region 152355	243 bp downstream
Tssr152356	transcription start site region 152356	258 bp downstream