rs37166995 SNP Detail

Summary

• ID
  rs37166995
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGATAG ACAACACGTG
  TCTGGCTTTT TTTTTTTTTT AAGCTTTTGA TCATCTATGT GTATATGTTA AAACATCTGC
  AAACTTTAAA TTTAGTGGAG CAGGAAAGAC TCTTCCTATC TTTGTTGTTG TTGACACCCA
  ATTCTCCTAA CAGATAGTGT CAGAAGGGAC TCCACTGACC TCACGGGTGA CAGACTCTCC
  K
  TTTTTTTCTT CTTCTTCAGA CTTTGGGTCA CTTGGAAAAA GCAGTGGTTC TGGAGCTTAC
  GTTGAAGCAC GTGAAAGCAT TGACAAATCT AATTGATCAG CAGCAGCAGA AAATCATTGC
  CCTGCAGAGC GGTTTACAAG CTGGTGAGTC CCCGGCCTGA TTAGTGTCTC CTGAGAGCTC
  AGTGCCAATC TAGCCCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51810821	NES14774569	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37166995					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810821	NES14774569	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639462 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1567 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	768 bp distal
Rr399817	regulatory region 399817	619 bp downstream
Rr636156	regulatory region 636156	1617 bp distal
Rr636157	regulatory region 636157	1756 bp distal
Rr636158	regulatory region 636158	1077 bp distal
Rr636159	regulatory region 636159	514 bp distal
Rr636160	regulatory region 636160	1079 bp proximal
Tssr58074	transcription start site region 58074	1967 bp downstream
Tssr58075	transcription start site region 58075	1819 bp downstream
Tssr58076	transcription start site region 58076	1714 bp downstream
Tssr58077	transcription start site region 58077	1635 bp downstream
Tssr58078	transcription start site region 58078	724 bp downstream
Tssr58079	transcription start site region 58079	505 bp downstream
Tssr58080	transcription start site region 58080	158 bp downstream
Tssr58081	transcription start site region 58081	269 bp upstream
Tssr58082	transcription start site region 58082	618 bp upstream