rs37167176 SNP Detail

Summary

• ID
  rs37167176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95970518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTATCT GGCTGGCTGC
  CTCCCTCTCC TCTCTCTTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TTTCCTTCTC CCTCTCCCTC CCTCCCCCTC TCAGTATATT GTGTACATAT TTATCTATAC
  ATTTGTATAT ACATGTATGT GTACATGTAT GTATGTATGC ATATGTGTGC ATGTATGTGT
  Y
  AGGCAACCAT GGAATGAAAC CTTTGAAACC AAGAGCCCAA ACAAACTTTC CCTCCTTTTG
  CACTGATCTG CTCAGGGGAA GGGTATCACC TTGTTCGACA CCAGCTACAG CACACACTAG
  GACCCAGTCT ATGGCCACCC TGTGCAAGTC TGTGGTGATC ACAAGGGTCT GCTATTAGAA
  TCTGAGCCAG ACTGCTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973419	NES14990780	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	T		C	C	T	C
ss145641427	ENSMUSSNP3892751	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37167176					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973419	NES14990780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95970518 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	Intron
Cpgi20868	CpG island 20868	1387 bp distal
Rr368590	regulatory region 368590	1437 bp upstream
Rr668196	regulatory region 668196	within coordinates
Rr668197	regulatory region 668197	960 bp proximal