rs37168039 SNP Detail

Summary

• ID
  rs37168039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114339842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGCAGT TTAAGATTGG
  GGGGGGGGGG GAGCGGGGGG GGGGCGGGGT GAGGCCTCCT GGGTTGTCCT GTTCTACAAA
  ATTTTTAAAA ATCAGTTTAA CGCTTAAGTG ACATAATAAA GGCTAAAGGG ATATATAAAC
  TGGGGAAGGA CCCACTATTA AATTTTAAAA GGAGCTTGTA ACCCTCTTTC ACATCCCGAG
  R
  AACATGGAGA TCAGCAGTTG AAGCTACCTT CGGGATTCCT TGATTGTGTA CTATTCTCCC
  TGCTGAGACG GCCCCCCGCC CCCCAGCACC CGCCGCCACA CTCAGATCAC CCCGAAATCC
  TGAAATTCAA GTCATGTGAA TGTGAAGGAA CGTCGTAGCT CACACAGGCA AACTGAGCAT
  CCCAAAGCAA TTCGACTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042475	NES15055437	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37168039					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042475	NES15055437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114339842 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	242 bp distal
Rr207539	regulatory region 207539	1042 bp distal
Rr207540	regulatory region 207540	359 bp proximal
Rr368881	regulatory region 368881	613 bp downstream
Trim71	tripartite motif-containing 71	494 bp downstream
Tssr91842	transcription start site region 91842	1665 bp downstream