rs37172036 SNP Detail

Summary

• ID
  rs37172036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5710886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCGGGA AGGTGGGCTC
  TGGCTCTTCT GCTGGCAACC CTAGCAGTGC CAGTGGGTCA GTGAAGAGCC GAGTAGGGGT
  TGCAGCAGGG CGGCTGGCAT CCTCGTGGCT GTGGGCACGG GCACGGGGGC TGGCTGGTGT
  AGGGGGCCGG ACTTCACCAG CATCACTGCC ACTGCGCAAG AGTGGGCCCC GAGCTGGCCT
  Y
  GGCTCAAAGG TATGTGGTGT CAGTGGGGGC CGGGCAGGTT GGCGAAGCTT ACGGGCAAAG
  AGGTCATCGG TAGGTGCAGG GGCCATGCCC CGCCGAGGGC TCCCCACACC GCCGGCCCAC
  ATGGGCGTGC TCTGTGGGCC TGACTCTCTG GGGGCCGGGC CGCATTGGTG GGCACGGGTC
  CTTGGTGCCC AGCCAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50578092	NES13650498	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37172036					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578092	NES13650498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5710886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	within coordinates
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157622	transcription start site region 157622	767 bp downstream