rs37172358 SNP Detail

Summary

• ID
  rs37172358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114338947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCAGCC ATAACGGAGT
  ACAGGTTTGG AGACTTCTCA TGAACAAAAG TGATAGATTG GTGATGACCT TCAGATGATT
  ATAGTTTTGG AATGTTAGGC AGGTGGCAAC CAGGTGGTTA ATACTCAAAC TTAAGAAACT
  TCACTTCCAA TGGGAATCTC CTGGTACCCA CCCTCACCAG CTCCTGCCAG CTCCTGCCAG
  Y
  TCCTGCCAGC CCCTGCCACC TGACCAGGGA CCGCTACCCG TCAGTCGCTC ACCGCAGTGA
  CAGAAGGTTT CCGGCCAGCC AGCACCCACG GTGTCTCCTT CCTGAATCTC TTTCCTGTCG
  TACCTCAGAA CTGGCTGCAG GTGCTCACCA AACATGGCTG GTGTCATGAT ATGGATCAGT
  CCATATCAAG GTACACTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042481	NES15055431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37172358					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042481	NES15055431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114338947 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	54 bp proximal
Rr207539	regulatory region 207539	147 bp distal
Rr207540	regulatory region 207540	1254 bp proximal
Rr368881	regulatory region 368881	99 bp upstream
Trim71	tripartite motif-containing 71	1389 bp downstream