rs37173030 SNP Detail

Summary

• ID
  rs37173030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAAAAT AAGGGAGGAA
  CCGAACAATA CTGGGGGAGG GGAGCGGTGT GTGTGTATGT CTTTCCTCTC CTATTCTTGC
  AAACTTTTCA TCCAATCGGA AACTAGAAGG ATGCCGCTTG TGCATTCTGG CTCACTAGCC
  GACATCCCGG TCCCCCGCCG TCACATGCTG TTATTGAACT TGGGAAATAT CCCAGTCCGG
  R
  GTGCACAAGC CTCTTCCAGA CCCACCTCCC GGCCGTAGCC GGGTCACAGG AAAGCCCAGC
  GTCGTTGTGA TCCGGGATTT TCCAATTTTC CCAGAGGATT CGCATCCGGT TGCTGGGAGA
  GGCTCCGTGG GGGGTCCGCG GCCAGGGAGG GGAGTGGGGC CGGGGTGGGG ATAAGAAGTG
  GAGGGTGGGC AGAGCGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618311	NES14659878	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	A	A	A		A	A	A	G		A
ss135871365	ENSMUSSNP922948	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
ss320956925	CHEV_3_127493534	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37173030					SNP	G	G	G	A	A	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618311	NES14659878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	488 bp distal
Cpgi13801	CpG island 13801	22 bp proximal
Gm56817	predicted gene, 56817	359 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	694 bp distal
Rr584861	regulatory region 584861	797 bp distal
Rr584862	regulatory region 584862	370 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	199 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1414 bp downstream
Tssr31595	transcription start site region 31595	1402 bp downstream
Tssr31596	transcription start site region 31596	1369 bp downstream
Tssr31597	transcription start site region 31597	1329 bp downstream
Tssr31598	transcription start site region 31598	1306 bp downstream
Tssr31599	transcription start site region 31599	807 bp downstream
Tssr31600	transcription start site region 31600	739 bp downstream
Tssr31601	transcription start site region 31601	687 bp downstream
Tssr31602	transcription start site region 31602	633 bp downstream
Tssr31603	transcription start site region 31603	615 bp downstream
Tssr31604	transcription start site region 31604	491 bp downstream
Tssr31605	transcription start site region 31605	within coordinates
Tssr31606	transcription start site region 31606	184 bp upstream
Tssr31607	transcription start site region 31607	422 bp upstream
Tssr31608	transcription start site region 31608	490 bp upstream
Tssr31609	transcription start site region 31609	541 bp upstream
Tssr31610	transcription start site region 31610	650 bp upstream
Tssr31611	transcription start site region 31611	758 bp upstream
Tssr35598	transcription start site region 35598	858 bp upstream
Tssr35599	transcription start site region 35599	776 bp upstream
Tssr35600	transcription start site region 35600	748 bp upstream
Tssr35601	transcription start site region 35601	715 bp upstream
Tssr35602	transcription start site region 35602	398 bp upstream