rs37173841 SNP Detail

Summary

• ID
  rs37173841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132283719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCAAA GGGCCTACTG
  CAAATATCCA CAAAGGTCCT GCTGGGAAGT GCTTTGGGGC TGTTAGGGGT AGGTGCTACA
  ACCACAGGGC AGGCACTAAG TGCTAGGCCT CCACACCATA CTTGGAAAGC TGGTACTCCC
  TGCCTCAGCT GAACAAGTGT AACAAAGCCA AGCTAAAGCC AGTAGCCTTG TGAGGACTTC
  R
  TCTTGAGAGA GGTTTTGGAG CACGGACTCT GCTGACCCCT TGTGGCTACA ACTGGTCACA
  GCATCTATGG GCGCTTCTCC ATTTCCCTTC TGGGAAGTGC TCCAACAAAG CTGGGGCTGG
  ATGGATTGAT AGGCATATCA TTTAAGTTGC TCAGAGCAAG GCAGGTGAGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373324	NES14476207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37173841					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373324	NES14476207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132283719 () rs orientation: forward

Symbol	Name	Function Class
Rr12284	regulatory region 12284	within coordinates
Tmcc2	transmembrane and coiled-coil domains 2	334 bp downstream
Tssr13633	transcription start site region 13633	1494 bp downstream
Tssr13634	transcription start site region 13634	1560 bp downstream
Tssr13635	transcription start site region 13635	1643 bp downstream