rs3717498 SNP Detail

Summary

• ID
  rs3717498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC CTGGACTTCT GAGTCCTTGG
  R
  AGTGTTGGAC ATCCTTGGGA GTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss5093762	WI_WGS_7_22701491	WI	MOUSE	f	SNP						A			G
ss12758464	IKBns_JC7151_4	ROCHEBIO	RPAMM	r	SNP	C	T	T	C	C		T	C	C			C	C	C
ss46005903	mCV22814567	ABI	CRAMUS_MOUSE	f	SNP									G	A
ss148677508	ENSMUSSNP1652234	ENSEMBL	ENSEMBL_Sanger	f	SNP										A
ss322134116	CHEV_7_31206991	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs3717498					SNP	G	A	A	G	G	A	A	G	G	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1122 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	118 bp downstream
Rr400240	regulatory region 400240	160 bp upstream
Rr644813	regulatory region 644813	1628 bp distal
Rr644814	regulatory region 644814	230 bp distal
Rr644815	regulatory region 644815	within coordinates
Rr644816	regulatory region 644816	813 bp proximal
Tssr2184	transcription start site region 2184	1372 bp upstream
Tssr65714	transcription start site region 65714	230 bp downstream
Tssr65715	transcription start site region 65715	300 bp upstream
Tssr65716	transcription start site region 65716	417 bp upstream
Tssr65717	transcription start site region 65717	461 bp upstream
Tssr65718	transcription start site region 65718	489 bp upstream
Tssr65719	transcription start site region 65719	1294 bp upstream
Tssr65720	transcription start site region 65720	1333 bp upstream
Tssr65721	transcription start site region 65721	1390 bp upstream
Tssr65722	transcription start site region 65722	1409 bp upstream
Tssr65723	transcription start site region 65723	1440 bp upstream
Tssr65724	transcription start site region 65724	1456 bp upstream
Tssr65725	transcription start site region 65725	1628 bp upstream
Tssr65726	transcription start site region 65726	1635 bp upstream
Tssr65727	transcription start site region 65727	1653 bp upstream
Tssr65728	transcription start site region 65728	1948 bp upstream
Tssr71743	transcription start site region 71743	1610 bp upstream
Tssr71744	transcription start site region 71744	1599 bp upstream
Tssr71745	transcription start site region 71745	336 bp upstream