rs3717503 SNP Detail

Summary

• ID
  rs3717503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG TCTCTGTGAC TTCATCTCCC
  Y
  GTGCTTTCCC TTGTTCATTG TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5093767	WI_WGS_9_40982721	WI	MOUSE	f	SNP		T	C
ss136338053	ENSMUSSNP4791144	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss322919550	CHEV_9_40588405	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3717503					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691618 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	1929 bp proximal
Gm16096	predicted gene 16096	205 bp downstream
Tssr84467	transcription start site region 84467	12 bp upstream
Tssr84468	transcription start site region 84468	754 bp upstream
Tssr84469	transcription start site region 84469	806 bp upstream
Tssr84470	transcription start site region 84470	1955 bp upstream