rs37175392 SNP Detail

Summary

• ID
  rs37175392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:130065389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAACTA AATCCTGTTT
  ATAGACAGGA CAGGTCTCTC AAGTGTCTAC TTGTTCTTTC TTCTATGAAG GCCTCATGGG
  TTTGGCACTC TGACTCCTGC CTCCTCCATC ACACCTACTC TTCATTTGAG CCCCTCCGTC
  CTTCCTCCTC CACTCTGTGG AAGAAAACCC AATGTCCTCC TAGGCCATCT ACCAACCGCT
  R
  CATGACCCTG TTTTATGCTA CAACTTCCCC AGCATCACCT TCAATACACA CTTTAAAAAG
  GAGGCCCCCA CTGTATTTCT ATGGTCTTCA GAGCAAACCA CCAATCAGTG AAGCAGACAA
  GAGTGATGGT CTCAGTGGAG AGCAGTCTGA TCCTCCGTAG CTCCACACTA CCACTGAAGA
  AGTATCAACG GTCTTCACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50471527	NES14118774	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
ss61062777	NES16064255	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37175392					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50471527	NES14118774	PERLEGEN	MM_PANEL	f	SNP	A/G
ss61062777	NES16064255	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130065389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ate1	arginyltransferase 1			Intron
				Noncoding-Transcript-Variant
Tssr75149	transcription start site region 75149			954 bp upstream
Tssr75150	transcription start site region 75150			171 bp downstream