rs3717561 SNP Detail

Summary

• ID
  rs3717561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA TGACACACCC AACCTGGGCA
  R
  CACGGTCCAT TCCTACCACA TCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5093826	WI_WGS_4_139166099	WI	MOUSE	f	SNP	G							A
ss37786205	NES09121475	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	G	G	G	A	G	A	G	G
ss147736084	ENSMUSSNP6176568	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3717561					SNP	G	G	A	A	A	G	A	A	A	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786205	NES09121475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1230 bp distal
Gm70191	predicted gene, 70191	1276 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Tssr40054	transcription start site region 40054	1394 bp downstream
Tssr40055	transcription start site region 40055	1381 bp downstream
Tssr40056	transcription start site region 40056	1360 bp downstream
Tssr40057	transcription start site region 40057	1299 bp downstream
Tssr40058	transcription start site region 40058	1272 bp downstream
Tssr40059	transcription start site region 40059	1248 bp downstream
Tssr40060	transcription start site region 40060	1188 bp downstream
Tssr40061	transcription start site region 40061	1178 bp downstream
Tssr40062	transcription start site region 40062	547 bp downstream
Tssr40063	transcription start site region 40063	926 bp upstream
Tssr40064	transcription start site region 40064	986 bp upstream
Tssr40065	transcription start site region 40065	1001 bp upstream
Tssr40066	transcription start site region 40066	1130 bp upstream
Tssr40067	transcription start site region 40067	1178 bp upstream
Tssr40068	transcription start site region 40068	1230 bp upstream
Tssr40069	transcription start site region 40069	1362 bp upstream
Tssr40070	transcription start site region 40070	1447 bp upstream
Tssr40071	transcription start site region 40071	1471 bp upstream
Tssr40072	transcription start site region 40072	1516 bp upstream
Tssr40073	transcription start site region 40073	1539 bp upstream
Tssr40074	transcription start site region 40074	1564 bp upstream
Tssr40075	transcription start site region 40075	1577 bp upstream
Tssr40076	transcription start site region 40076	1604 bp upstream
Tssr40077	transcription start site region 40077	1623 bp upstream
Tssr44314	transcription start site region 44314	431 bp upstream
Tssr44315	transcription start site region 44315	964 bp downstream
Tssr44316	transcription start site region 44316	1047 bp downstream
Tssr44317	transcription start site region 44317	1105 bp downstream
Tssr44318	transcription start site region 44318	1488 bp downstream