rs37176709 SNP Detail

Summary

• ID
  rs37176709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40987826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGTGGC ATCTAATTAG
  CTAAGACAAA GACCCAGGTT CTGTTCATTG CATCAGTCCA AGATCATGTT GGAAAGAACA
  TTGTAGTAGC CTGGCGTTGC CCTGGACAAC TTTTTAGACT CTTGCCTTCA GCACTCAGAC
  ACTTTGTCAA GAGTCTCTGG TGACATAGTT CTGCCTTGGC CTGCTTTCCC TCCAGCGTGA
  R
  CATTCACTGG GTTATAGATC AACTTGCTAC TTCCTGTAGA CAGCTTTACC CTCTGTTCTG
  GCTTCCATCC GCAGGCCCTT CTTTAGGACG TATGCCTTTC CCAGCCCTCT ATGATGCTCT
  CCTTGATGAC CCATCTTATG TCTCACTACT GGTCAGCGAG TGACCGTCTC TTTGATCAAA
  TACCATACTC ATTGACTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50828962	NES13537340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37176709					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828962	NES13537340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40987826 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547535	regulatory region 547535	91 bp distal
Rr547536	regulatory region 547536	195 bp proximal
Rr547537	regulatory region 547537	405 bp proximal
Tssr159239	transcription start site region 159239	1103 bp downstream