rs37176776 SNP Detail

Summary

• ID
  rs37176776
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105289078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCATAA CCCCCCTACC
  TCGCCTTCAG TAACCATTCA TGCATTCAGT CATTCAACAA CTATCTAGTG AGTGTCTATT
  ATGAGTGAGA TACTGAGGCA ATGGGATTAT AGCAGTGAGG ACCAGAGGGG AGGTCTATGC
  TCTCTGGGAA CTTAACCCTG CAGAGGCAAT GTTTACCAGA ACCCTTTCCT AGGCTCAGAC
  K
  CTCACTTGCC ACTCAGGCAT GCTCTACAAT CCTGGTCTTT CACATTCTTT GGTGTTCCTT
  CCCCTCTTCC TTCAGCCGGT CTGGGCTCTT CCTTTCTCCA TCTCATGCAC CTGACTCCCT
  TAGGCCCTCC CCAGCAGGCC TTGGTTGAAG CAGTTAGTGA ATGTTCCTGG TGTCAGGTGA
  AAGGCTCTCT TTCCCAGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51920950	NES14946571	PERLEGEN	MM_PANEL2	f	SNP		T	G	T	T
ss322370117	CHEV_7_112788385	CHEVERUD	SCREENING_POP	f	SNP	T					G
SNP Consensus Information
SNP					Consensus Type	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs37176776					SNP	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920950	NES14946571	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105289078 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	213 bp proximal
Gm45799	predicted gene 45799	681 bp upstream
Rr400513	regulatory region 400513	377 bp upstream
Rr652793	regulatory region 652793	within coordinates
Rr652794	regulatory region 652794	196 bp proximal
Rr652795	regulatory region 652795	435 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	185 bp upstream
Tssr2358	transcription start site region 2358	545 bp upstream
Tssr68382	transcription start site region 68382	592 bp upstream
Tssr68383	transcription start site region 68383	651 bp upstream
Tssr68384	transcription start site region 68384	912 bp upstream
Tssr68385	transcription start site region 68385	1125 bp upstream
Tssr68386	transcription start site region 68386	1181 bp upstream
Tssr74083	transcription start site region 74083	446 bp downstream