rs37179122 SNP Detail

Summary

• ID
  rs37179122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135389458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAAGGAT GGATAAACAG
  CCCCCATGAG AGCACTGCAG CAAATGGTCC TCTTGTTACC CTCATAACAA GAGGAGGAAG
  GCTTTGGGTA GGTCACTCAT GCCCAGTCCC TGTGGTGTCT GCAACACCCT CCCTGCCTCC
  TCCTACGTGT CCTCTTTGAA CAACAAGTCA AACTTCACCA GTGCCTTAGA GCCTGAAAAC
  Y
  GGAGGCAGTA TCTTCCATGT TTCCTGTAAA TCTGCAGAGT CCTGGGCTCC CAGGCAAATA
  CATGGCAAGC TCTGAGCATC TTTCTTTGAC CTTCTGTCTT TTTTCAAAAT TTGAGAGATT
  TCACTAAGTT ACTCAGGCTG GCCTTGAACT TGTGACCCTC CTGCTGCTGC AACCTCTCAA
  GTACCTGGGA TTTCAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss51379240	NES14465431	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs37179122					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51379240	NES14465431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135389458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			995 bp distal
Rr419149	regulatory region 419149			within coordinates
Rr419150	regulatory region 419150			356 bp distal
Rr419151	regulatory region 419151			627 bp proximal