rs37179162 SNP Detail

Summary

• ID
  rs37179162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:50845337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTGTTT CCACTACTTT
  TCTTCTATGT TATTGTCAGT CATAGAGAAT AAAGCACAGC TGTTTTATGT ATTTTTTTGA
  GTTTGTGCTG CACCCCCATT GTTCACTCCA ATTACCTGTT ACCTCCGAAG TATCCCCATG
  AGCACCATTA CCAGAGTATG TTCATCTGGA GGCTTCTGAC ATCCGTCTGA GTTGCTTGAA
  R
  ATGTCAATGC TTATCATCAG GCCAAGGTAC AATCTGCTTT CTCTACTACA TAACCACTTC
  TTATCTTTTT CAAATGAAAG GGAGTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TGGTTAGACT CTTGAAGACC CTAAAAGTTG TTTATTCCTC ATGAAACTCT CTTGATTCCT
  CACCTGTAGT CATTTAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50863462	NES14174762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		G
ss323299478	CHEV_10_50689047	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37179162					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50863462	NES14174762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:50845337 () rs orientation: forward

Symbol	Name	Function Class
Sim1	single-minded family bHLH transcription factor 1	Intron
Tssr93227	transcription start site region 93227	120 bp upstream