rs3717988 SNP Detail

Summary

• ID
  rs3717988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:101456498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTTCATG CAATGGAAGC TGGATCCTTT GTGAGAGCAC
  AATGGCAGAG CTCTAGCTTC CTTGATGGGC TTTTCAAAAT CTGTATTCAC GCAAATATTT
  Y
  TCCTCCTTTA CAGTGGCAAA GATATCATTG GAAATTATGG TCTGTAAGAA GGATAGTTCC
  TCTTAAGTAG AATAAACACA GTTTGAATTT GTTGATTCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5094255	WI_WGS_1_102073086	WI	MOUSE	f	SNP	T							C
ss45173947	mCV24336600	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		T
ss49451051	NES12810034	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	T	C	C	C	T	C	C	C
ss145046174	ENSMUSSNP5144132	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3717988					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49451051	NES12810034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:101456498 () rs orientation: forward

Symbol	Name	Function Class
Gm57575	predicted gene, 57575	633 bp downstream
Gm70454	predicted gene, 70454	126 bp upstream