rs3718072 SNP Detail

Summary

• ID
  rs3718072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGGGAT GAGGTCAGAG
  AGGAACCTGA GTGATGGAGA TGTAAGGGGG GTGAGGAGAT GAGGACAGTC ACCATGGTGG
  AAAGTGACCA CGGTGCAGGA GGGACAGCTC CCTGGCACAG GGTAGAGGAG GTGGCAATGA
  CACACCCAAC CTGGGCAACA CGGTCCATTC CTACCACATC TCTACCTCGC CTTCATCCCA
  R
  AGCCAAAAGT CTGGGTCCTG TCGTGGCACC TCCATACTGG GACTGAGGCT GAGCAGAAAG
  CCCTGAAGCT GAGTCACAAC CACCCTCCAC CTCATGTACC TTACCCGGAG TCTCAGGGTA
  CCTAGATCAT CAGAGGAGCA CGGCCAGCAG CTATCCCAGC TCTTAAGCCT GTGCTTAAGG
  ATATTCTTAA ATATTCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5094343	WI_WGS_4_139166142	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3718072					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1273 bp distal
Gm70191	predicted gene, 70191	1233 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1437 bp downstream
Tssr40055	transcription start site region 40055	1424 bp downstream
Tssr40056	transcription start site region 40056	1403 bp downstream
Tssr40057	transcription start site region 40057	1342 bp downstream
Tssr40058	transcription start site region 40058	1315 bp downstream
Tssr40059	transcription start site region 40059	1291 bp downstream
Tssr40060	transcription start site region 40060	1231 bp downstream
Tssr40061	transcription start site region 40061	1221 bp downstream
Tssr40062	transcription start site region 40062	590 bp downstream
Tssr40063	transcription start site region 40063	883 bp upstream
Tssr40064	transcription start site region 40064	943 bp upstream
Tssr40065	transcription start site region 40065	958 bp upstream
Tssr40066	transcription start site region 40066	1087 bp upstream
Tssr40067	transcription start site region 40067	1135 bp upstream
Tssr40068	transcription start site region 40068	1187 bp upstream
Tssr40069	transcription start site region 40069	1319 bp upstream
Tssr40070	transcription start site region 40070	1404 bp upstream
Tssr40071	transcription start site region 40071	1428 bp upstream
Tssr40072	transcription start site region 40072	1473 bp upstream
Tssr40073	transcription start site region 40073	1496 bp upstream
Tssr40074	transcription start site region 40074	1521 bp upstream
Tssr40075	transcription start site region 40075	1534 bp upstream
Tssr40076	transcription start site region 40076	1561 bp upstream
Tssr40077	transcription start site region 40077	1580 bp upstream
Tssr44314	transcription start site region 44314	474 bp upstream
Tssr44315	transcription start site region 44315	921 bp downstream
Tssr44316	transcription start site region 44316	1004 bp downstream
Tssr44317	transcription start site region 44317	1062 bp downstream
Tssr44318	transcription start site region 44318	1445 bp downstream