rs3718076 SNP Detail

Summary

• ID
  rs3718076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGAGGT CAGAGAGGAA
  CCTGAGTGAT GGAGATGTAA GGGGGGTGAG GAGATGAGGA CAGTCACCAT GGTGGAAAGT
  GACCACGGTG CAGGAGGGAC AGCTCCCTGG CACAGGGTAG AGGAGGTGGC AATGACACAC
  CCAACCTGGG CAACACGGTC CATTCCTACC ACATCTCTAC CTCGCCTTCA TCCCAGAGCC
  R
  AAAGTCTGGG TCCTGTCGTG GCACCTCCAT ACTGGGACTG AGGCTGAGCA GAAAGCCCTG
  AAGCTGAGTC ACAACCACCC TCCACCTCAT GTACCTTACC CGGAGTCTCA GGGTACCTAG
  ATCATCAGAG GAGCACGGCC AGCAGCTATC CCAGCTCTTA AGCCTGTGCT TAAGGATATT
  CTTAAATATT CTTAGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5094347	WI_WGS_4_139166147	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3718076					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1278 bp distal
Gm70191	predicted gene, 70191	1228 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1442 bp downstream
Tssr40055	transcription start site region 40055	1429 bp downstream
Tssr40056	transcription start site region 40056	1408 bp downstream
Tssr40057	transcription start site region 40057	1347 bp downstream
Tssr40058	transcription start site region 40058	1320 bp downstream
Tssr40059	transcription start site region 40059	1296 bp downstream
Tssr40060	transcription start site region 40060	1236 bp downstream
Tssr40061	transcription start site region 40061	1226 bp downstream
Tssr40062	transcription start site region 40062	595 bp downstream
Tssr40063	transcription start site region 40063	878 bp upstream
Tssr40064	transcription start site region 40064	938 bp upstream
Tssr40065	transcription start site region 40065	953 bp upstream
Tssr40066	transcription start site region 40066	1082 bp upstream
Tssr40067	transcription start site region 40067	1130 bp upstream
Tssr40068	transcription start site region 40068	1182 bp upstream
Tssr40069	transcription start site region 40069	1314 bp upstream
Tssr40070	transcription start site region 40070	1399 bp upstream
Tssr40071	transcription start site region 40071	1423 bp upstream
Tssr40072	transcription start site region 40072	1468 bp upstream
Tssr40073	transcription start site region 40073	1491 bp upstream
Tssr40074	transcription start site region 40074	1516 bp upstream
Tssr40075	transcription start site region 40075	1529 bp upstream
Tssr40076	transcription start site region 40076	1556 bp upstream
Tssr40077	transcription start site region 40077	1575 bp upstream
Tssr44314	transcription start site region 44314	479 bp upstream
Tssr44315	transcription start site region 44315	916 bp downstream
Tssr44316	transcription start site region 44316	999 bp downstream
Tssr44317	transcription start site region 44317	1057 bp downstream
Tssr44318	transcription start site region 44318	1440 bp downstream