rs3718117 SNP Detail

Summary

• ID
  rs3718117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTGAGT GATGGAGATG
  TAAGGGGGGT GAGGAGATGA GGACAGTCAC CATGGTGGAA AGTGACCACG GTGCAGGAGG
  GACAGCTCCC TGGCACAGGG TAGAGGAGGT GGCAATGACA CACCCAACCT GGGCAACACG
  GTCCATTCCT ACCACATCTC TACCTCGCCT TCATCCCAGA GCCAAAAGTC TGGGTCCTGT
  Y
  GTGGCACCTC CATACTGGGA CTGAGGCTGA GCAGAAAGCC CTGAAGCTGA GTCACAACCA
  CCCTCCACCT CATGTACCTT ACCCGGAGTC TCAGGGTACC TAGATCATCA GAGGAGCACG
  GCCAGCAGCT ATCCCAGCTC TTAAGCCTGT GCTTAAGGAT ATTCTTAAAT ATTCTTAGAG
  GATATTTATC AACACCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5094388	WI_WGS_4_139166164	WI	MOUSE	f	SNP	T			C
ss147736094	ENSMUSSNP2309435	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3718117					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1295 bp distal
Gm70191	predicted gene, 70191	1211 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1459 bp downstream
Tssr40055	transcription start site region 40055	1446 bp downstream
Tssr40056	transcription start site region 40056	1425 bp downstream
Tssr40057	transcription start site region 40057	1364 bp downstream
Tssr40058	transcription start site region 40058	1337 bp downstream
Tssr40059	transcription start site region 40059	1313 bp downstream
Tssr40060	transcription start site region 40060	1253 bp downstream
Tssr40061	transcription start site region 40061	1243 bp downstream
Tssr40062	transcription start site region 40062	612 bp downstream
Tssr40063	transcription start site region 40063	861 bp upstream
Tssr40064	transcription start site region 40064	921 bp upstream
Tssr40065	transcription start site region 40065	936 bp upstream
Tssr40066	transcription start site region 40066	1065 bp upstream
Tssr40067	transcription start site region 40067	1113 bp upstream
Tssr40068	transcription start site region 40068	1165 bp upstream
Tssr40069	transcription start site region 40069	1297 bp upstream
Tssr40070	transcription start site region 40070	1382 bp upstream
Tssr40071	transcription start site region 40071	1406 bp upstream
Tssr40072	transcription start site region 40072	1451 bp upstream
Tssr40073	transcription start site region 40073	1474 bp upstream
Tssr40074	transcription start site region 40074	1499 bp upstream
Tssr40075	transcription start site region 40075	1512 bp upstream
Tssr40076	transcription start site region 40076	1539 bp upstream
Tssr40077	transcription start site region 40077	1558 bp upstream
Tssr44314	transcription start site region 44314	496 bp upstream
Tssr44315	transcription start site region 44315	899 bp downstream
Tssr44316	transcription start site region 44316	982 bp downstream
Tssr44317	transcription start site region 44317	1040 bp downstream
Tssr44318	transcription start site region 44318	1423 bp downstream