rs3718144 SNP Detail

Summary

• ID
  rs3718144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32628473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCA TTAAACGGGG AGTTTAAAAA
  R
  CTGGACAGAG GGGTTATCAA GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5094415	WI_WGS_9_32850218	WI	MOUSE	f	SNP	A			G
ss136250159	ENSMUSSNP2925895	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3718144					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32628473 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	88 bp upstream
Rr676235	regulatory region 676235	1603 bp distal
Rr676236	regulatory region 676236	645 bp distal
Rr676237	regulatory region 676237	159 bp proximal
Tssr84287	transcription start site region 84287	416 bp downstream
Tssr88694	transcription start site region 88694	931 bp downstream