rs3718150 SNP Detail

Summary

• ID
  rs3718150
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC TGTCTTTTGT ATTTCAACTC
  M
  AACACCACTT TTCCAAACTG AGACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5094421	WI_WGS_9_40982837	WI	MOUSE	f	SNP						C	A
ss52005363	NES15019228	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A	C	C	C		A	C	C	A		C
ss136338062	ENSMUSSNP2323724	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss322919555	CHEV_9_40588521	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3718150					SNP	C	C	C	C	C	C	A	A	C	C	C	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005363	NES15019228	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691734 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	1813 bp proximal
Gm16096	predicted gene 16096	89 bp downstream
Tssr84467	transcription start site region 84467	73 bp downstream
Tssr84468	transcription start site region 84468	638 bp upstream
Tssr84469	transcription start site region 84469	690 bp upstream
Tssr84470	transcription start site region 84470	1839 bp upstream
Tssr84471	transcription start site region 84471	1966 bp upstream