rs3718169 SNP Detail

Summary

• ID
  rs3718169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT TTCAACTCAA ACACCACTTT
  Y
  CCAAACTGAG ACTGTAGTCC CCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5094440	WI_WGS_9_40982849	WI	MOUSE	f	SNP			C	T
ss52005362	NES15019230	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		C	C	C	C		T	C	T		C
ss136338065	ENSMUSSNP859000	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C
ss322919556	CHEV_9_40588533	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3718169					SNP	C	C	C	T	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005362	NES15019230	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691746 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	1801 bp proximal
Gm16096	predicted gene 16096	77 bp downstream
Tssr84467	transcription start site region 84467	85 bp downstream
Tssr84468	transcription start site region 84468	626 bp upstream
Tssr84469	transcription start site region 84469	678 bp upstream
Tssr84470	transcription start site region 84470	1827 bp upstream
Tssr84471	transcription start site region 84471	1954 bp upstream