rs37183123 SNP Detail

Summary

• ID
  rs37183123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22008429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCGCCTG CCCTCTGCCT
  CCCAAGTGCT GGGATTAAAA GCATGCACCA CCATGCCCAG CTGTCCTAAT CTTTTAAATA
  TTTACATTCT TGTAGGTGTC AACATCTTTC GATTTTAAAG CTACCAACAG TTCACTGAAT
  CCATTCTTTA TTGTCTCAAT CACACAGAAT AGATGGATGA AAGGGACCCT GTGACAAAGG
  R
  TAACTATGCT TTTATCAGTT CAACCTCTCA AACAAATCAA AGAGAGATTC TTTTATTAAA
  AAAAATATAT GTGTGTATGT ATATATGTGT AGTATGAGAG AGACTGTACC CATAACATTG
  TATATGTGTG GAAGTCAGAA GACAACTTTC AATAGTCTGT GTTCTTCTTC CACCATGGGT
  TCCTGAGATG ATACTCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434228	NES14436579	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37183123					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434228	NES14436579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22008429 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr397620	regulatory region 397620	1026 bp downstream
Rr397621	regulatory region 397621	360 bp downstream
Rr574172	regulatory region 574172	456 bp distal
Rr574173	regulatory region 574173	1408 bp proximal
Tssr28574	transcription start site region 28574	1073 bp downstream
Tssr28575	transcription start site region 28575	816 bp upstream