rs37184641 SNP Detail

Summary

• ID
  rs37184641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188738491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAAAAC TTACCACACC
  TGTAATCCCC GCTCTAAGGG ACCCTTTCTT TGGCCTCCAC CTGCACTCAC ACATACAAGT
  AAGACAGACC AATCTTTTCT AAAGTGACAA TATAACTTAG TTGTTTGTCA TAAAGCTATA
  TTCTCTTGAA TGCCTGGAAG GAAATATGTG AGCCATCCAC AGAGAAACCA GGGTTAAGGT
  Y
  TGCCACGAGC ACCATTCTGC TTCTCTGTAG TAACACTGCC CACGCCTTTT GTGGACTATT
  TCACTTTCAC ATACCAGGTC ACTTGCAATA GGTTCCTGTA ATCGTAGGTG GGCAGGGAAG
  ACACACTATT TACACTAGAT GAGGTCATTT GCACAGGACC TAGTAAGTAT AAAATGCAGC
  GGAAGTCATT TGCATATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419774	NES14449035	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37184641					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419774	NES14449035	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188738491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1193	CpG island 1193	671 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3	within coordinates
Rr372619	regulatory region 372619	within coordinates
Rr425737	regulatory region 425737	within coordinates
Rr425738	regulatory region 425738	611 bp proximal
Rr425739	regulatory region 425739	1536 bp proximal
Tssr15707	transcription start site region 15707	1535 bp downstream
Tssr15708	transcription start site region 15708	1562 bp downstream
Tssr15709	transcription start site region 15709	1600 bp downstream