rs3718593 SNP Detail

Summary

• ID
  rs3718593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46452699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGAGGT CGAGCGGGAC
  AGGCGGCCTG GGCTGGCGCC CTCAGGTGAC TATGGCTAAC AAGTTGGGAA CTTGTGGCGG
  TGGCGTGCCC GAGGCTTTGT GTTTGGAAAG GCCTGCCACA GGCCTTGAGG TCGGCCCCGC
  AGAAGTGTGG GGCGGTCCCT GAGGACTGAT TGGGTGGTGT CCCTGTTCCC GGGGCCCTGA
  R
  CATTTCACCG GCACGTGTCC CTTCCATCCC TCCGTCAGAC ATTTTGTGCC CACCACGTGC
  TGGGAAATTG AGTTGTTAGA CCATCTTCTT CCTTGAACTT GAAACGATGA GTTCATGCCT
  TGAGCTTTTC ACTCTAGTCA GCCACAAAAA TCAATAGAGT AGGAAGTAAC TAAATTTAGG
  TAGAGTACTC ATTTTCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5094869	WI_WGS_4_45289408	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3718593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46452699 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	within coordinates
Cpgi14257	CpG island 14257	within coordinates
Gm69233	predicted gene, 69233	1206 bp upstream
Rr100990	regulatory region 100990	within coordinates
Tssr37119	transcription start site region 37119	1812 bp downstream
Tssr37120	transcription start site region 37120	1796 bp downstream
Tssr37121	transcription start site region 37121	1705 bp downstream
Tssr37122	transcription start site region 37122	1648 bp downstream
Tssr37123	transcription start site region 37123	1588 bp downstream
Tssr37124	transcription start site region 37124	1573 bp downstream
Tssr37125	transcription start site region 37125	1542 bp downstream
Tssr37126	transcription start site region 37126	475 bp downstream
Tssr41577	transcription start site region 41577	1213 bp upstream
Tssr41578	transcription start site region 41578	84 bp upstream