rs37187616 SNP Detail

Summary

• ID
  rs37187616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47955686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATATCT AAAAATCTTA
  CTTTATATTT CAACTTTTTA ACATTTTCAA GTAAGAGCTC CTAATGATTG AGTACACTGC
  GATTATTTTT GAGGACTAGT GACACTTATT CATAGTTCAA AATATGCTTT GGTCATACAG
  AGCACATATA TGCATACATG TCAGATATAT ATATGGTACT ATTTTTATGT GGACAAACTG
  Y
  AGTTGGAGAG TCCTGCACAA CCAAGGTCAC AGTAGAACAT AATAGATGTT CATATGTTAA
  ATGTTATGAA TATAGTCCTT CTTGAAGATT TGATTTTATT TAATTTGATT CACAAATAGA
  TTACATATAT AACTAATGAA AATACATAAT ATCCTAGGGG TAAAGGGTAA TATCAGCCTA
  GAATTACAGG TTATTTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51246466	NES14286115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37187616					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246466	NES14286115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47955686 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	690 bp upstream
Rr371240	regulatory region 371240	827 bp downstream
Tssr6618	transcription start site region 6618	911 bp upstream