rs37188185 SNP Detail

Summary

• ID
  rs37188185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30173775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCACA AAACTGGGTG
  CTAGAACTGT TGGCCCTCCG GCACCCGCTC CACCTTCTCC CTGGCCCAGC ACTGGCTCCG
  CCCGGCCCCG CCCCGCACAC TCACCTGCGC CGGCTCCGGG CTGGGCTCAC CGCCGCCTCC
  CAGCTCTGCT CCGAGTCCAC ACCCGAGGAA CTAGGCAAAA AAAGGGCCCT CGTTTGGAGC
  R
  GGCCCAATGG ACAGAACTTG AGGCGTGCCC AGGTTGAGCC GAGAGCGGCG CCCCAAATCA
  CCAGGACCTT GGCGGGAGGA GGTGGCGCCG GAGCGCGGAG CCCAGCGGGG GAACAAAGAG
  GAGCCGGGAT GGGGCCGCGC GCTTCCTGGG TGTCGGGTGA CAGGTCTGCA GGGGAAGGCC
  CCGGCCGAGC CACCTGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574659	NES14856887	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37188185					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574659	NES14856887	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30173775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	within coordinates
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rncr4	retina expressed non-coding RNA 4	within coordinates
Rr146073	regulatory region 146073	1774 bp distal
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	906 bp downstream
Tssr55328	transcription start site region 55328	1481 bp upstream
Tssr55329	transcription start site region 55329	1501 bp upstream
Tssr55330	transcription start site region 55330	1549 bp upstream
Tssr55331	transcription start site region 55331	1581 bp upstream
Tssr55332	transcription start site region 55332	1604 bp upstream
Tssr60107	transcription start site region 60107	300 bp downstream
Tssr60108	transcription start site region 60108	324 bp downstream
Tssr60109	transcription start site region 60109	341 bp downstream
Tssr60110	transcription start site region 60110	952 bp downstream
Tssr60111	transcription start site region 60111	1957 bp downstream