rs37188253 SNP Detail

Summary

• ID
  rs37188253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39803348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAACTG CCATCTACTG
  TATAAAGAAG CTTCTTTGAC AAGGGGTGAG GTTTGTATCA AAAGCTGAAT CGCATTTACA
  AGTAAGTGAT AGAATTAGTG GCTATTTTCT CTACCTTTTA ACCTGTCCTA ATTTGTCATC
  TTTGCTTTGA ACAGCAAATA TATAAAGCAA ATGGCATGTG GGTACAGCTA TGTGTGTCTG
  Y
  AGTTCCAGTC TCTTAAGATT CAAGGGTTAG AGGTAAGCTT GGGCAACATG GTGAGATACT
  TCCTATCCCT GCAAAGAGAA GATAAAGGAC TCTGGAAGAA GGCTATCTGT GTTCAAACCC
  TCAATCTAGT AATGTTTGCT AACTTTGTGA CCTTTGGTAA GTTACTTAAT TTCTCTGGGG
  TTCAGTTTCC TCATAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51614724	NES14840541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37188253					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614724	NES14840541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39803348 () rs orientation: forward

Symbol	Name	Function Class
Gm7554	predicted gene 7554	1786 bp downstream
Rr151838	regulatory region 151838	1666 bp distal