rs37188866 SNP Detail

Summary

• ID
  rs37188866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94005640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCAGC ACTCAGTGAG
  CAGCAGCACT CCTTCATGGC CCCTGCTTCG GTTCTTGGCT CCAGGCTCCT GCTTTCAGTT
  TCTGCCCTGG CTTTGTCTTG TGATGGACGA TAAGCTGGGA GTTGAAACAA ACCTTTTCTT
  TCCAGGGTTG ATTTTGGTCC TCGTTCTTTA TCATCCTTGA CAGGCTCCCG CTGTCTGTCC
  R
  CCTGGGCCAC GGTGTTCTTC TTCACTCACT CATTCATCCT CCGCCCTCCT TCCCATTCTC
  TGTCCAGCCT ATGTCCCTTT CCTCACGGCT CTAACAGACA CTGATACTCC TTTACCCAGC
  TCTCTCTCTA CTCTTAGCCC CATCCTTTCA GAAATATCTT TTCAGTACAT AGCCCTATCA
  AAAAAAAAAA AAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51369977	NES13733971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G	G		A	A	G	A		G
ss321864580	CHEV_6_93978653	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37188866					SNP	G	G	G	G	G	A	A	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51369977	NES13733971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94005640 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	Intron
Tssr62166	transcription start site region 62166	177 bp downstream